diff --git a/nnf_and_sif_to_json_py/galFiltered.nnf b/nnf_and_sif_to_json_py/galFiltered.nnf
new file mode 100644
index 0000000..26a5776
--- /dev/null
+++ b/nnf_and_sif_to_json_py/galFiltered.nnf
@@ -0,0 +1,362 @@
+Yeast\ Network\ (galFiltered.gml) YKR026C pp YGL122C
+Yeast\ Network\ (galFiltered.gml) YGL122C pp YOL123W
+Yeast\ Network\ (galFiltered.gml) YMR146C pp YDR429C
+Yeast\ Network\ (galFiltered.gml) YDR429C pp YFL017C
+Yeast\ Network\ (galFiltered.gml) YFL017C pp YOL059W
+Yeast\ Network\ (galFiltered.gml) YFL017C pp YER102W
+Yeast\ Network\ (galFiltered.gml) YFL017C pp YOR362C
+Yeast\ Network\ (galFiltered.gml) YOL123W pp YGL044C
+Yeast\ Network\ (galFiltered.gml) YGR203W pp YIL061C
+Yeast\ Network\ (galFiltered.gml) YIL061C pp YDL013W
+Yeast\ Network\ (galFiltered.gml) YIL061C pp YNL199C
+Yeast\ Network\ (galFiltered.gml) YIL061C pp YLR153C
+Yeast\ Network\ (galFiltered.gml) YCR084C pp YBR112C
+Yeast\ Network\ (galFiltered.gml) YCR084C pp YCL067C
+Yeast\ Network\ (galFiltered.gml) YCL067C pd YIL015W
+Yeast\ Network\ (galFiltered.gml) YCL067C pp YMR043W
+Yeast\ Network\ (galFiltered.gml) YCL067C pd YDR461W
+Yeast\ Network\ (galFiltered.gml) YCL067C pd YFL026W
+Yeast\ Network\ (galFiltered.gml) YER112W pp YOR167C
+Yeast\ Network\ (galFiltered.gml) YJR022W pp YNR050C
+Yeast\ Network\ (galFiltered.gml) YJR022W pp YNL050C
+Yeast\ Network\ (galFiltered.gml) YJR022W pp YEL015W
+Yeast\ Network\ (galFiltered.gml) YJR022W pp YOR167C
+Yeast\ Network\ (galFiltered.gml) YJR022W pp YLR264W
+Yeast\ Network\ (galFiltered.gml) YJR022W pp YNR053C
+Yeast\ Network\ (galFiltered.gml) YNR050C pp YMR138W
+Yeast\ Network\ (galFiltered.gml) YEL015W pp YML064C
+Yeast\ Network\ (galFiltered.gml) YLR264W pp YER112W
+Yeast\ Network\ (galFiltered.gml) YLR264W pp YOL149W
+Yeast\ Network\ (galFiltered.gml) YLR264W pp YBL026W
+Yeast\ Network\ (galFiltered.gml) YNR053C pp YJL203W
+Yeast\ Network\ (galFiltered.gml) YNR053C pp YDL030W
+Yeast\ Network\ (galFiltered.gml) YER116C pp YDL013W
+Yeast\ Network\ (galFiltered.gml) YNL307C pp YAL038W
+Yeast\ Network\ (galFiltered.gml) YAL038W pd YPL075W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YCR012W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YGR254W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YHR174W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YIL133C
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YLR044C
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YOL120C
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YNL301C
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YCL030C
+Yeast\ Network\ (galFiltered.gml) YNL216W pp YDR171W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YBR093C
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YER074W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YIL069C
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YAL038W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YOL127W
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YDR050C
+Yeast\ Network\ (galFiltered.gml) YNL216W pd YOL086C
+Yeast\ Network\ (galFiltered.gml) YCR012W pd YJR060W
+Yeast\ Network\ (galFiltered.gml) YCL030C pd YKR099W
+Yeast\ Network\ (galFiltered.gml) YAL030W pp YER143W
+Yeast\ Network\ (galFiltered.gml) YOR327C pp YER143W
+Yeast\ Network\ (galFiltered.gml) YDR412W pp YCR086W
+Yeast\ Network\ (galFiltered.gml) YDR412W pp YGL013C
+Yeast\ Network\ (galFiltered.gml) YDR412W pp YLR117C
+Yeast\ Network\ (galFiltered.gml) YDR412W pp YPR119W
+Yeast\ Network\ (galFiltered.gml) YCR086W pp YOR264W
+Yeast\ Network\ (galFiltered.gml) YGL013C pd YJL219W
+Yeast\ Network\ (galFiltered.gml) YGL013C pd YOL156W
+Yeast\ Network\ (galFiltered.gml) YLR117C pp YBR190W
+Yeast\ Network\ (galFiltered.gml) YPR119W pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YER179W pp YLR044C
+Yeast\ Network\ (galFiltered.gml) YER179W pp YLR134W
+Yeast\ Network\ (galFiltered.gml) YER179W pp YIL105C
+Yeast\ Network\ (galFiltered.gml) YOR361C pp YMR309C
+Yeast\ Network\ (galFiltered.gml) YOR361C pp YDR429C
+Yeast\ Network\ (galFiltered.gml) YMR309C pp YNL047C
+Yeast\ Network\ (galFiltered.gml) YMR186W pp YBR155W
+Yeast\ Network\ (galFiltered.gml) YEL009C pd YMR108W
+Yeast\ Network\ (galFiltered.gml) YEL009C pd YOR202W
+Yeast\ Network\ (galFiltered.gml) YEL009C pd YCL030C
+Yeast\ Network\ (galFiltered.gml) YEL009C pd YBR248C
+Yeast\ Network\ (galFiltered.gml) YEL009C pd YOL058W
+Yeast\ Network\ (galFiltered.gml) YEL009C pd YMR300C
+Yeast\ Network\ (galFiltered.gml) YOL058W pp YNL189W
+Yeast\ Network\ (galFiltered.gml) YMR138W pp YHR141C
+Yeast\ Network\ (galFiltered.gml) YMR138W pp YLR109W
+Yeast\ Network\ (galFiltered.gml) YCL032W pp YDR032C
+Yeast\ Network\ (galFiltered.gml) YCL032W pp YLR362W
+Yeast\ Network\ (galFiltered.gml) YCL032W pp YDR103W
+Yeast\ Network\ (galFiltered.gml) YLR362W pp YER124C
+Yeast\ Network\ (galFiltered.gml) YLR362W pp YMR186W
+Yeast\ Network\ (galFiltered.gml) YLR362W pp YPL240C
+Yeast\ Network\ (galFiltered.gml) YDR103W pp YLR362W
+Yeast\ Network\ (galFiltered.gml) YJR060W pd YPR167C
+Yeast\ Network\ (galFiltered.gml) YBR019C pd YOL051W
+Yeast\ Network\ (galFiltered.gml) YBR019C pd YGL035C
+Yeast\ Network\ (galFiltered.gml) YOL051W pd YBR020W
+Yeast\ Network\ (galFiltered.gml) YOL051W pd YLR081W
+Yeast\ Network\ (galFiltered.gml) YOL051W pp YPL248C
+Yeast\ Network\ (galFiltered.gml) YOL051W pd YBR018C
+Yeast\ Network\ (galFiltered.gml) YGL035C pd YLR044C
+Yeast\ Network\ (galFiltered.gml) YGL035C pd YLR377C
+Yeast\ Network\ (galFiltered.gml) YGL035C pd YIL162W
+Yeast\ Network\ (galFiltered.gml) YBR020W pd YGL035C
+Yeast\ Network\ (galFiltered.gml) YPL248C pd YBR019C
+Yeast\ Network\ (galFiltered.gml) YPL248C pd ?
+Yeast\ Network\ (galFiltered.gml) YPL248C pd YJR048W
+Yeast\ Network\ (galFiltered.gml) YPL248C pd YGL035C
+Yeast\ Network\ (galFiltered.gml) YPL248C pd YML051W
+Yeast\ Network\ (galFiltered.gml) YPL248C pp YML051W
+Yeast\ Network\ (galFiltered.gml) YPL248C pd YBR020W
+Yeast\ Network\ (galFiltered.gml) YPL248C pd YLR081W
+Yeast\ Network\ (galFiltered.gml) YPL248C pd YBR018C
+Yeast\ Network\ (galFiltered.gml) YIR009W pp YKR099W
+Yeast\ Network\ (galFiltered.gml) YIR009W pp YIL143C
+Yeast\ Network\ (galFiltered.gml) YIR009W pp YDR184C
+Yeast\ Network\ (galFiltered.gml) YIR009W pp YNL091W
+Yeast\ Network\ (galFiltered.gml) YIL143C pp YDR311W
+Yeast\ Network\ (galFiltered.gml) YDR184C pp YLR319C
+Yeast\ Network\ (galFiltered.gml) YNL091W pp YNL164C
+Yeast\ Network\ (galFiltered.gml) YNL236W pp YKL012W
+Yeast\ Network\ (galFiltered.gml) YKL012W pp YKL074C
+Yeast\ Network\ (galFiltered.gml) YML032C pp YNL312W
+Yeast\ Network\ (galFiltered.gml) YNL312W pd YPL111W
+Yeast\ Network\ (galFiltered.gml) YLR116W pp YKL012W
+Yeast\ Network\ (galFiltered.gml) YDR309C pp YLR229C
+Yeast\ Network\ (galFiltered.gml) YLR229C pp YJL157C
+Yeast\ Network\ (galFiltered.gml) YGR058W pp YOR264W
+Yeast\ Network\ (galFiltered.gml) YLR256W pd YML054C
+Yeast\ Network\ (galFiltered.gml) YLR256W pd YJR048W
+Yeast\ Network\ (galFiltered.gml) YLR256W pd YEL039C
+Yeast\ Network\ (galFiltered.gml) YGL237C pd YJR048W
+Yeast\ Network\ (galFiltered.gml) YBL021C pd YJR048W
+Yeast\ Network\ (galFiltered.gml) YDR311W pp YKL028W
+Yeast\ Network\ (galFiltered.gml) YPL149W pp YHR171W
+Yeast\ Network\ (galFiltered.gml) YPL149W pp YBR217W
+Yeast\ Network\ (galFiltered.gml) YHR171W pp YDR412W
+Yeast\ Network\ (galFiltered.gml) YHR171W pp YNR007C
+Yeast\ Network\ (galFiltered.gml) YBR217W pp YNR007C
+Yeast\ Network\ (galFiltered.gml) YKL109W pp YGL237C
+Yeast\ Network\ (galFiltered.gml) YKL109W pp YBL021C
+Yeast\ Network\ (galFiltered.gml) YKL109W pd YJR048W
+Yeast\ Network\ (galFiltered.gml) YKL109W pd YGL035C
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YIL015W
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YJL159W
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YKR097W
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YGR108W
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YDR461W
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YNL145W
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YJL157C
+Yeast\ Network\ (galFiltered.gml) YMR043W pd YFL026W
+Yeast\ Network\ (galFiltered.gml) YGR108W pp YBR135W
+Yeast\ Network\ (galFiltered.gml) YNL145W pd YCL067C
+Yeast\ Network\ (galFiltered.gml) YNL145W pd YHR084W
+Yeast\ Network\ (galFiltered.gml) YJL157C pp YAL040C
+Yeast\ Network\ (galFiltered.gml) YJL157C pp YOR212W
+Yeast\ Network\ (galFiltered.gml) YJL203W pp YOL136C
+Yeast\ Network\ (galFiltered.gml) YLL021W pp YLR362W
+Yeast\ Network\ (galFiltered.gml) YOL156W pd YBL005W
+Yeast\ Network\ (galFiltered.gml) YKL101W pp YBR160W
+Yeast\ Network\ (galFiltered.gml) YBR160W pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YBR160W pp YGR108W
+Yeast\ Network\ (galFiltered.gml) YBL005W pd YJL219W
+Yeast\ Network\ (galFiltered.gml) YDR323C pp YOR036W
+Yeast\ Network\ (galFiltered.gml) YOR036W pp YDR100W
+Yeast\ Network\ (galFiltered.gml) YOR036W pp YGL161C
+Yeast\ Network\ (galFiltered.gml) YGL008C pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YER040W pd YPR035W
+Yeast\ Network\ (galFiltered.gml) YER040W pd YGR019W
+Yeast\ Network\ (galFiltered.gml) YNL098C pp YLR310C
+Yeast\ Network\ (galFiltered.gml) YLR310C pp YER103W
+Yeast\ Network\ (galFiltered.gml) YPL089C pp YHR030C
+Yeast\ Network\ (galFiltered.gml) YHR030C pp YLL021W
+Yeast\ Network\ (galFiltered.gml) YHR030C pp YER111C
+Yeast\ Network\ (galFiltered.gml) YJL089W pd YER065C
+Yeast\ Network\ (galFiltered.gml) YJL089W pd YKR097W
+Yeast\ Network\ (galFiltered.gml) YJL089W pd YLR377C
+Yeast\ Network\ (galFiltered.gml) YDR335W pp YDR174W
+Yeast\ Network\ (galFiltered.gml) YLL028W pp YGL166W
+Yeast\ Network\ (galFiltered.gml) YGL166W pd YHR053C
+Yeast\ Network\ (galFiltered.gml) YGL166W pd YHR055C
+Yeast\ Network\ (galFiltered.gml) YKL074C pp YGL035C
+Yeast\ Network\ (galFiltered.gml) YML064C pp YHR198C
+Yeast\ Network\ (galFiltered.gml) YML064C pp YLR284C
+Yeast\ Network\ (galFiltered.gml) YML064C pp YDR174W
+Yeast\ Network\ (galFiltered.gml) YNL047C pp YIL105C
+Yeast\ Network\ (galFiltered.gml) ? pd YKR099W
+Yeast\ Network\ (galFiltered.gml) ? pd YGL035C
+Yeast\ Network\ (galFiltered.gml) YJR066W pp YLR116W
+Yeast\ Network\ (galFiltered.gml) YPL075W pd YCR012W
+Yeast\ Network\ (galFiltered.gml) YPL075W pd YGR254W
+Yeast\ Network\ (galFiltered.gml) YPL075W pd YHR174W
+Yeast\ Network\ (galFiltered.gml) YPL075W pp YNL199C
+Yeast\ Network\ (galFiltered.gml) YPL075W pd YDR050C
+Yeast\ Network\ (galFiltered.gml) YPL075W pd YOL086C
+Yeast\ Network\ (galFiltered.gml) YNL199C pp YPR048W
+Yeast\ Network\ (galFiltered.gml) YPR048W pp YOR355W
+Yeast\ Network\ (galFiltered.gml) YPR048W pp YDL215C
+Yeast\ Network\ (galFiltered.gml) YLR321C pp YDR412W
+Yeast\ Network\ (galFiltered.gml) YBR072W pd YGL073W
+Yeast\ Network\ (galFiltered.gml) YGL073W pp YOR178C
+Yeast\ Network\ (galFiltered.gml) YGL073W pd YHR053C
+Yeast\ Network\ (galFiltered.gml) YGL073W pd YHR055C
+Yeast\ Network\ (galFiltered.gml) YGL073W pd YER103W
+Yeast\ Network\ (galFiltered.gml) YBL069W pp YGL008C
+Yeast\ Network\ (galFiltered.gml) YNL189W pp YDL236W
+Yeast\ Network\ (galFiltered.gml) YNL189W pp YPL111W
+Yeast\ Network\ (galFiltered.gml) YNL189W pp YER065C
+Yeast\ Network\ (galFiltered.gml) YNL189W pp YPR062W
+Yeast\ Network\ (galFiltered.gml) YLR319C pp YLR362W
+Yeast\ Network\ (galFiltered.gml) YNL167C pd YOR202W
+Yeast\ Network\ (galFiltered.gml) YGL161C pp YDR100W
+Yeast\ Network\ (galFiltered.gml) YMR183C pp YGR009C
+Yeast\ Network\ (galFiltered.gml) YGR009C pp YAL030W
+Yeast\ Network\ (galFiltered.gml) YGR009C pp YOR327C
+Yeast\ Network\ (galFiltered.gml) YGR009C pp YDR335W
+Yeast\ Network\ (galFiltered.gml) YGR009C pp YBL050W
+Yeast\ Network\ (galFiltered.gml) YAL040C pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YFR034C pd YBR093C
+Yeast\ Network\ (galFiltered.gml) YER133W pp YDR412W
+Yeast\ Network\ (galFiltered.gml) YER133W pp YOR178C
+Yeast\ Network\ (galFiltered.gml) YER133W pp YOR315W
+Yeast\ Network\ (galFiltered.gml) YER133W pp YMR311C
+Yeast\ Network\ (galFiltered.gml) YER133W pp YBR050C
+Yeast\ Network\ (galFiltered.gml) YIL162W pd YNL167C
+Yeast\ Network\ (galFiltered.gml) YFL038C pp YOR036W
+Yeast\ Network\ (galFiltered.gml) YOR355W pp YNL091W
+Yeast\ Network\ (galFiltered.gml) YML123C pd YFR034C
+Yeast\ Network\ (galFiltered.gml) YPL031C pp YHR071W
+Yeast\ Network\ (galFiltered.gml) YML051W pp YBR020W
+Yeast\ Network\ (galFiltered.gml) YML051W pp YDR009W
+Yeast\ Network\ (galFiltered.gml) YDR009W pd YGL035C
+Yeast\ Network\ (galFiltered.gml) YLL019C pp YIL113W
+Yeast\ Network\ (galFiltered.gml) YIL113W pp YHR030C
+Yeast\ Network\ (galFiltered.gml) YML024W pd YNL216W
+Yeast\ Network\ (galFiltered.gml) YER111C pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YDR146C pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YDR146C pd YGL035C
+Yeast\ Network\ (galFiltered.gml) YDR354W pd YEL009C
+Yeast\ Network\ (galFiltered.gml) YMR044W pp YIL061C
+Yeast\ Network\ (galFiltered.gml) YOL149W pp YOR167C
+Yeast\ Network\ (galFiltered.gml) YBR135W pp YER102W
+Yeast\ Network\ (galFiltered.gml) YOR089C pp YDR323C
+Yeast\ Network\ (galFiltered.gml) YNL117W pd YJL089W
+Yeast\ Network\ (galFiltered.gml) YLR175W pp YNL307C
+Yeast\ Network\ (galFiltered.gml) YDR167W pp YLR432W
+Yeast\ Network\ (galFiltered.gml) YAR007C pp YML032C
+Yeast\ Network\ (galFiltered.gml) YAR007C pd YPL111W
+Yeast\ Network\ (galFiltered.gml) YKL161C pp YPL089C
+Yeast\ Network\ (galFiltered.gml) YLR075W pp YPR102C
+Yeast\ Network\ (galFiltered.gml) YPL240C pp YBR155W
+Yeast\ Network\ (galFiltered.gml) YPL240C pp YOR036W
+Yeast\ Network\ (galFiltered.gml) YER052C pp YNL135C
+Yeast\ Network\ (galFiltered.gml) YNL135C pp YDR174W
+Yeast\ Network\ (galFiltered.gml) YGL134W pp YPL031C
+Yeast\ Network\ (galFiltered.gml) YGL134W pp YLR258W
+Yeast\ Network\ (galFiltered.gml) YLR258W pp YIL045W
+Yeast\ Network\ (galFiltered.gml) YLR258W pp YBR274W
+Yeast\ Network\ (galFiltered.gml) YJL194W pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YBL026W pp YOR167C
+Yeast\ Network\ (galFiltered.gml) YBL050W pp YOR036W
+Yeast\ Network\ (galFiltered.gml) YHR084W pp YMR043W
+Yeast\ Network\ (galFiltered.gml) YHR084W pd YDR461W
+Yeast\ Network\ (galFiltered.gml) YHR084W pd YFL026W
+Yeast\ Network\ (galFiltered.gml) YBR274W pp YMR255W
+Yeast\ Network\ (galFiltered.gml) YMR255W pp YGL122C
+Yeast\ Network\ (galFiltered.gml) YLR452C pp YHR005C
+Yeast\ Network\ (galFiltered.gml) YHR005C pp YLR362W
+Yeast\ Network\ (galFiltered.gml) YDR299W pd YJL194W
+Yeast\ Network\ (galFiltered.gml) YOR120W pd YPL248C
+Yeast\ Network\ (galFiltered.gml) YPR041W pp YOR361C
+Yeast\ Network\ (galFiltered.gml) YPR041W pp YMR309C
+Yeast\ Network\ (galFiltered.gml) YDL215C pd YER040W
+Yeast\ Network\ (galFiltered.gml) YDL215C pp YLR432W
+Yeast\ Network\ (galFiltered.gml) YDL030W pp YDL013W
+Yeast\ Network\ (galFiltered.gml) YDL030W pp YMR005W
+Yeast\ Network\ (galFiltered.gml) YGR085C pp YLR075W
+Yeast\ Network\ (galFiltered.gml) YGR085C pp YDR395W
+Yeast\ Network\ (galFiltered.gml) YDR395W pp YDL075W
+Yeast\ Network\ (galFiltered.gml) YDR395W pp YIL133C
+Yeast\ Network\ (galFiltered.gml) YDR395W pp YNL069C
+Yeast\ Network\ (galFiltered.gml) YDR395W pp YER056CA
+Yeast\ Network\ (galFiltered.gml) YDR395W pp YIL052C
+Yeast\ Network\ (galFiltered.gml) YDR395W pp YOL127W
+Yeast\ Network\ (galFiltered.gml) YDR395W pp YPR102C
+Yeast\ Network\ (galFiltered.gml) YGR088W pd YLR256W
+Yeast\ Network\ (galFiltered.gml) YPR113W pd YMR043W
+Yeast\ Network\ (galFiltered.gml) YIL070C pp YML054C
+Yeast\ Network\ (galFiltered.gml) YGR046W pp YNL236W
+Yeast\ Network\ (galFiltered.gml) YDR070C pp YFL017C
+Yeast\ Network\ (galFiltered.gml) YOR212W pp YLR362W
+Yeast\ Network\ (galFiltered.gml) YNL036W pp YIR009W
+Yeast\ Network\ (galFiltered.gml) YML114C pp YDR167W
+Yeast\ Network\ (galFiltered.gml) YMR117C pp YCL032W
+Yeast\ Network\ (galFiltered.gml) YMR117C pp YPR010C
+Yeast\ Network\ (galFiltered.gml) YDL023C pp YJL159W
+Yeast\ Network\ (galFiltered.gml) YGR136W pp YGR058W
+Yeast\ Network\ (galFiltered.gml) YLR345W pp YLR321C
+Yeast\ Network\ (galFiltered.gml) YBR045C pp YIL045W
+Yeast\ Network\ (galFiltered.gml) YBR045C pp YOR178C
+Yeast\ Network\ (galFiltered.gml) YER054C pp YER133W
+Yeast\ Network\ (galFiltered.gml) YER054C pp YBR045C
+Yeast\ Network\ (galFiltered.gml) YPR145W pp YMR117C
+Yeast\ Network\ (galFiltered.gml) YDR277C pp YJR022W
+Yeast\ Network\ (galFiltered.gml) YDR277C pp YDL194W
+Yeast\ Network\ (galFiltered.gml) YGR218W pp YGL097W
+Yeast\ Network\ (galFiltered.gml) YGL097W pp YOR204W
+Yeast\ Network\ (galFiltered.gml) YLR293C pp YGL097W
+Yeast\ Network\ (galFiltered.gml) YLR249W pp YPR080W
+Yeast\ Network\ (galFiltered.gml) YLR249W pp YBR118W
+Yeast\ Network\ (galFiltered.gml) YPR080W pp YAL003W
+Yeast\ Network\ (galFiltered.gml) YBR118W pp YAL003W
+Yeast\ Network\ (galFiltered.gml) YPL211W pp YGR014W
+Yeast\ Network\ (galFiltered.gml) YGR014W pp YJL030W
+Yeast\ Network\ (galFiltered.gml) YGR014W pp YJL013C
+Yeast\ Network\ (galFiltered.gml) YJL030W pp YGL229C
+Yeast\ Network\ (galFiltered.gml) YJL013C pp YGL229C
+Yeast\ Network\ (galFiltered.gml) YER062C pp YPL201C
+Yeast\ Network\ (galFiltered.gml) YDL014W pp YOR310C
+Yeast\ Network\ (galFiltered.gml) YLR197W pp YDL014W
+Yeast\ Network\ (galFiltered.gml) YLR197W pp YOR310C
+Yeast\ Network\ (galFiltered.gml) YOR326W pp YGL106W
+Yeast\ Network\ (galFiltered.gml) YOL016C pp YBR109C
+Yeast\ Network\ (galFiltered.gml) YBR109C pp YOR326W
+Yeast\ Network\ (galFiltered.gml) YBR109C pp YFR014C
+Yeast\ Network\ (galFiltered.gml) YJR109C pp YOR303W
+Yeast\ Network\ (galFiltered.gml) YOR039W pp YOR303W
+Yeast\ Network\ (galFiltered.gml) YGL115W pp YGL208W
+Yeast\ Network\ (galFiltered.gml) YMR291W pp YGL115W
+Yeast\ Network\ (galFiltered.gml) YMR021C pd YLR214W
+Yeast\ Network\ (galFiltered.gml) YPR124W pd YMR021C
+Yeast\ Network\ (galFiltered.gml) YDL081C pp YLR340W
+Yeast\ Network\ (galFiltered.gml) YHR135C pp YNL116W
+Yeast\ Network\ (galFiltered.gml) YNL154C pp YKL204W
+Yeast\ Network\ (galFiltered.gml) YER079W pp YHR135C
+Yeast\ Network\ (galFiltered.gml) YER079W pp YNL154C
+Yeast\ Network\ (galFiltered.gml) YDR382W pp YDL130W
+Yeast\ Network\ (galFiltered.gml) YDR382W pp YFL039C
+Yeast\ Network\ (galFiltered.gml) YFL039C pp YCL040W
+Yeast\ Network\ (galFiltered.gml) YFL039C pp YHR179W
+Yeast\ Network\ (galFiltered.gml) YNL311C pp YKL001C
+Yeast\ Network\ (galFiltered.gml) YIL074C pp YNL311C
+Yeast\ Network\ (galFiltered.gml) YER081W pp YIL074C
+Yeast\ Network\ (galFiltered.gml) YJL036W pp YDL113C
+Yeast\ Network\ (galFiltered.gml) YEL041W pp YHR115C
+Yeast\ Network\ (galFiltered.gml) YHR115C pp YOR215C
+Yeast\ Network\ (galFiltered.gml) YDL063C pp YPL131W
+Yeast\ Network\ (galFiltered.gml) YGR048W pp YPL222W
+Yeast\ Network\ (galFiltered.gml) YBR170C pp YGR048W
+Yeast\ Network\ (galFiltered.gml) YFR037C pp YOR290C
+Yeast\ Network\ (galFiltered.gml) YML074C pp YJL190C
+Yeast\ Network\ (galFiltered.gml) YMR058W pp YER145C
+Yeast\ Network\ (galFiltered.gml) YKL211C pp YER090W
+Yeast\ Network\ (galFiltered.gml) YNL113W pp YPR110C
+Yeast\ Network\ (galFiltered.gml) YLR191W pp YGL153W
+Yeast\ Network\ (galFiltered.gml) YNL214W pp YGL153W
+Yeast\ Network\ (galFiltered.gml) YDR244W pp YLR191W
+Yeast\ Network\ (galFiltered.gml) YDR244W pp YGL153W
+Yeast\ Network\ (galFiltered.gml) YDR244W pp YNL214W
+Yeast\ Network\ (galFiltered.gml) YDR244W pp YDR142C
+Yeast\ Network\ (galFiltered.gml) YDR244W pp YDL078C
+Yeast\ Network\ (galFiltered.gml) YDR142C pp YGL153W
+Yeast\ Network\ (galFiltered.gml) YDR142C pp YIL160C
+Yeast\ Network\ (galFiltered.gml) YER110C pp YML007W
+Yeast\ Network\ (galFiltered.gml) YDL088C pp YER110C
+Yeast\ Network\ (galFiltered.gml) YBL079W pp YDL088C
+Yeast\ Network\ (galFiltered.gml) YGL202W pp YGR074W
+Yeast\ Network\ (galFiltered.gml) YGR074W pp YBR043C
diff --git a/nnf_and_sif_to_json_py/galFiltered.sif b/nnf_and_sif_to_json_py/galFiltered.sif
new file mode 100644
index 0000000..9e71eb5
--- /dev/null
+++ b/nnf_and_sif_to_json_py/galFiltered.sif
@@ -0,0 +1,362 @@
+YKR026C pp YGL122C
+YGR218W pp YGL097W
+YGL097W pp YOR204W
+YLR249W pp YPR080W
+YLR249W pp YBR118W
+YLR293C pp YGL097W
+YMR146C pp YDR429C
+YDR429C pp YFL017C
+YPR080W pp YAL003W
+YBR118W pp YAL003W
+YOL123W pp YGL044C
+YPL211W pp YGR014W
+YJL030W pp YGL229C
+YJL013C pp YGL229C
+YGL122C pp YOL123W
+YGR014W pp YJL030W
+YGR014W pp YJL013C
+YGR203W pp YIL061C
+YCR084C pp YBR112C
+YCR084C pp YCL067C
+YER112W pp YOR167C
+YJR022W pp YNR050C
+YJR022W pp YNL050C
+YJR022W pp YEL015W
+YJR022W pp YOR167C
+YJR022W pp YLR264W
+YJR022W pp YNR053C
+YER116C pp YDL013W
+YNL307C pp YAL038W
+YNL216W pd YCR012W
+YNL216W pd YGR254W
+YNL216W pd YHR174W
+YNL216W pd YIL133C
+YNL216W pd YLR044C
+YNL216W pd YOL120C
+YNL216W pd YNL301C
+YNL216W pd YCL030C
+YNL216W pp YDR171W
+YNL216W pd YBR093C
+YNL216W pd YER074W
+YNL216W pd YIL069C
+YNL216W pd YAL038W
+YNL216W pd YOL127W
+YNL216W pd YDR050C
+YNL216W pd YOL086C
+YAL030W pp YER143W
+YOR327C pp YER143W
+YER062C pp YPL201C
+YDR412W pp YCR086W
+YDR412W pp YGL013C
+YDR412W pp YLR117C
+YDR412W pp YPR119W
+YDL014W pp YOR310C
+YER179W pp YLR044C
+YER179W pp YLR134W
+YER179W pp YIL105C
+YOR361C pp YMR309C
+YOR361C pp YDR429C
+YOR326W pp YGL106W
+YMR186W pp YBR155W
+YEL009C pd YMR108W
+YEL009C pd YOR202W
+YEL009C pd YCL030C
+YEL009C pd YBR248C
+YEL009C pd YOL058W
+YEL009C pd YMR300C
+YMR138W pp YHR141C
+YMR138W pp YLR109W
+YCL032W pp YDR032C
+YCL032W pp YLR362W
+YCL032W pp YDR103W
+YCR012W pd YJR060W
+YBR019C pd YOL051W
+YBR019C pd YGL035C
+YOL051W pd YBR020W
+YOL051W pd YLR081W
+YOL051W pp YPL248C
+YOL051W pd YBR018C
+YIR009W pp YKR099W
+YIR009W pp YIL143C
+YIR009W pp YDR184C
+YIR009W pp YNL091W
+YNL236W pp YKL012W
+YML032C pp YNL312W
+YLR116W pp YKL012W
+YCR086W pp YOR264W
+YDR309C pp YLR229C
+YGR058W pp YOR264W
+YJR109C pp YOR303W
+YLR256W pd YML054C
+YLR256W pd YJR048W
+YLR256W pd YEL039C
+YGL237C pd YJR048W
+YBL021C pd YJR048W
+YDR311W pp YKL028W
+YPL149W pp YHR171W
+YPL149W pp YBR217W
+YKL109W pp YGL237C
+YKL109W pp YBL021C
+YKL109W pd YJR048W
+YKL109W pd YGL035C
+YMR043W pd YIL015W
+YMR043W pd YJL159W
+YMR043W pd YKR097W
+YMR043W pd YGR108W
+YMR043W pd YDR461W
+YMR043W pd YNL145W
+YMR043W pd YJL157C
+YMR043W pd YFL026W
+YHR171W pp YDR412W
+YHR171W pp YNR007C
+YNR050C pp YMR138W
+YJL203W pp YOL136C
+YLL021W pp YLR362W
+YGL013C pd YJL219W
+YGL013C pd YOL156W
+YKL101W pp YBR160W
+YCL067C pd YIL015W
+YCL067C pp YMR043W
+YCL067C pd YDR461W
+YCL067C pd YFL026W
+YBL005W pd YJL219W
+YDR323C pp YOR036W
+YGL008C pd YMR043W
+YER040W pd YPR035W
+YER040W pd YGR019W
+YNL098C pp YLR310C
+YGL115W pp YGL208W
+YPL089C pp YHR030C
+YJL089W pd YER065C
+YJL089W pd YKR097W
+YJL089W pd YLR377C
+YMR021C pd YLR214W
+YDR335W pp YDR174W
+YLL028W pp YGL166W
+YIL143C pp YDR311W
+YDL081C pp YLR340W
+YKL012W pp YKL074C
+YEL015W pp YML064C
+YHR135C pp YNL116W
+YMR309C pp YNL047C
+YNL154C pp YKL204W
+? pd YKR099W
+YJR066W pp YLR116W
+YDR382W pp YDL130W
+YDR382W pp YFL039C
+YFL039C pp YCL040W
+YFL039C pp YHR179W
+YPL075W pd YCR012W
+YPL075W pd YGR254W
+YPL075W pd YHR174W
+YPL075W pp YNL199C
+YPL075W pd YDR050C
+YPL075W pd YOL086C
+YNL199C pp YPR048W
+? pd YGL035C
+YLR321C pp YDR412W
+YBR072W pd YGL073W
+YCL030C pd YKR099W
+YBL069W pp YGL008C
+YNL189W pp YDL236W
+YNL189W pp YPL111W
+YNL189W pp YER065C
+YNL189W pp YPR062W
+YDR184C pp YLR319C
+YNL311C pp YKL001C
+YOL058W pp YNL189W
+YOL016C pp YBR109C
+YJL036W pp YDL113C
+YEL041W pp YHR115C
+YNL167C pd YOR202W
+YDL063C pp YPL131W
+YGL161C pp YDR100W
+YMR183C pp YGR009C
+YMR291W pp YGL115W
+YGR048W pp YPL222W
+YAL040C pd YMR043W
+YFR034C pd YBR093C
+YFR037C pp YOR290C
+YER133W pp YDR412W
+YER133W pp YOR178C
+YER133W pp YOR315W
+YER133W pp YMR311C
+YER133W pp YBR050C
+YGL035C pd YLR044C
+YGL035C pd YLR377C
+YGL035C pd YIL162W
+YFL038C pp YOR036W
+YOR355W pp YNL091W
+YML074C pp YJL190C
+YMR058W pp YER145C
+YML123C pd YFR034C
+YPL031C pp YHR071W
+YAL038W pd YPL075W
+YML051W pp YBR020W
+YML051W pp YDR009W
+YLL019C pp YIL113W
+YML024W pd YNL216W
+YOR039W pp YOR303W
+YER111C pd YMR043W
+YDR146C pd YMR043W
+YDR146C pd YGL035C
+YKL211C pp YER090W
+YDR354W pd YEL009C
+YNL113W pp YPR110C
+YLR310C pp YER103W
+YNL047C pp YIL105C
+YBR160W pd YMR043W
+YBR160W pp YGR108W
+YIL113W pp YHR030C
+YLR117C pp YBR190W
+YFL017C pp YOL059W
+YFL017C pp YER102W
+YFL017C pp YOR362C
+YMR044W pp YIL061C
+YOL149W pp YOR167C
+YOR036W pp YDR100W
+YOR036W pp YGL161C
+YLR191W pp YGL153W
+YER110C pp YML007W
+YBR135W pp YER102W
+YNL214W pp YGL153W
+YJR060W pd YPR167C
+YOR089C pp YDR323C
+YNL117W pd YJL089W
+YLR175W pp YNL307C
+YDR167W pp YLR432W
+YGR108W pp YBR135W
+YDR244W pp YLR191W
+YDR244W pp YGL153W
+YDR244W pp YNL214W
+YDR244W pp YDR142C
+YDR244W pp YDL078C
+YPR119W pd YMR043W
+YDR142C pp YGL153W
+YDR142C pp YIL160C
+YBR020W pd YGL035C
+YDR009W pd YGL035C
+YPL248C pd YBR019C
+YPL248C pd ?
+YPL248C pd YJR048W
+YPL248C pd YGL035C
+YPL248C pd YML051W
+YPL248C pp YML051W
+YPL248C pd YBR020W
+YPL248C pd YLR081W
+YPL248C pd YBR018C
+YAR007C pp YML032C
+YAR007C pd YPL111W
+YKL161C pp YPL089C
+YNL312W pd YPL111W
+YLR075W pp YPR102C
+YLR229C pp YJL157C
+YPL240C pp YBR155W
+YPL240C pp YOR036W
+YOL156W pd YBL005W
+YML064C pp YHR198C
+YML064C pp YLR284C
+YML064C pp YDR174W
+YER052C pp YNL135C
+YPR124W pd YMR021C
+YGL166W pd YHR053C
+YGL166W pd YHR055C
+YGL134W pp YPL031C
+YGL134W pp YLR258W
+YJL194W pd YMR043W
+YLR264W pp YER112W
+YLR264W pp YOL149W
+YLR264W pp YBL026W
+YBL050W pp YOR036W
+YNL145W pd YCL067C
+YNL145W pd YHR084W
+YBR274W pp YMR255W
+YLR452C pp YHR005C
+YDR299W pd YJL194W
+YIL074C pp YNL311C
+YLR319C pp YLR362W
+YGL073W pp YOR178C
+YGL073W pd YHR053C
+YGL073W pd YHR055C
+YGL073W pd YER103W
+YOR120W pd YPL248C
+YPR041W pp YOR361C
+YPR041W pp YMR309C
+YNL135C pp YDR174W
+YBR217W pp YNR007C
+YMR255W pp YGL122C
+YLR258W pp YIL045W
+YLR258W pp YBR274W
+YDL215C pd YER040W
+YDL215C pp YLR432W
+YER079W pp YHR135C
+YER079W pp YNL154C
+YDL030W pp YDL013W
+YDL030W pp YMR005W
+YLR362W pp YER124C
+YLR362W pp YMR186W
+YLR362W pp YPL240C
+YHR084W pp YMR043W
+YHR084W pd YDR461W
+YHR084W pd YFL026W
+YGR085C pp YLR075W
+YGR085C pp YDR395W
+YKL074C pp YGL035C
+YGR088W pd YLR256W
+YER081W pp YIL074C
+YPR113W pd YMR043W
+YIL070C pp YML054C
+YIL061C pp YDL013W
+YIL061C pp YNL199C
+YIL061C pp YLR153C
+YGR046W pp YNL236W
+YNL091W pp YNL164C
+YHR030C pp YLL021W
+YHR030C pp YER111C
+YPR048W pp YOR355W
+YPR048W pp YDL215C
+YHR005C pp YLR362W
+YDR070C pp YFL017C
+YJL157C pp YAL040C
+YJL157C pp YOR212W
+YNL036W pp YIR009W
+YML114C pp YDR167W
+YMR117C pp YCL032W
+YMR117C pp YPR010C
+YHR115C pp YOR215C
+YGR009C pp YAL030W
+YGR009C pp YOR327C
+YGR009C pp YDR335W
+YGR009C pp YBL050W
+YDL088C pp YER110C
+YLR197W pp YDL014W
+YLR197W pp YOR310C
+YGL202W pp YGR074W
+YIL162W pd YNL167C
+YBR170C pp YGR048W
+YOR212W pp YLR362W
+YDR103W pp YLR362W
+YDL023C pp YJL159W
+YGR136W pp YGR058W
+YBR109C pp YOR326W
+YBR109C pp YFR014C
+YDR395W pp YDL075W
+YDR395W pp YIL133C
+YDR395W pp YNL069C
+YDR395W pp YER056CA
+YDR395W pp YIL052C
+YDR395W pp YOL127W
+YDR395W pp YPR102C
+YLR345W pp YLR321C
+YBL079W pp YDL088C
+YBR045C pp YIL045W
+YBR045C pp YOR178C
+YER054C pp YER133W
+YER054C pp YBR045C
+YPR145W pp YMR117C
+YNR053C pp YJL203W
+YNR053C pp YDL030W
+YGR074W pp YBR043C
+YDR277C pp YJR022W
+YDR277C pp YDL194W
+YBL026W pp YOR167C
diff --git a/nnf_and_sif_to_json_py/nnf_to_json.py b/nnf_and_sif_to_json_py/nnf_to_json.py
new file mode 100644
index 0000000..a00d2bf
--- /dev/null
+++ b/nnf_and_sif_to_json_py/nnf_to_json.py
@@ -0,0 +1,28 @@
+r=open("galFiltered.nnf","r")
+w=open("result2.json","w")
+nodes=[]
+w.write("[\n")
+for p in r:
+    if nodes:
+        if not gave_newline:
+            gave_newline=True
+            w.write(",\n")
+    temp=p[:-1].split(" ")[3:]
+    if temp[0] not in nodes:
+        nodes.append(temp[0])
+        w.write('{ data: { id: "'+temp[0]+'" }, group: "nodes" }')
+        gave_newline=False
+    if len(temp)>1:
+        if temp[2] not in nodes:
+            if not gave_newline:
+                w.write(",\n")
+            nodes.append(temp[2])
+            w.write('{ data: { id: "'+temp[2]+'" }, group: "nodes" },\n')
+            gave_newline=True
+    if not gave_newline:
+        w.write(",\n")
+    w.write('{ data: { id: "'+ temp[0]+" ("+temp[1]+") "+temp[2]+'", source: "'+temp[0]+'", target: "'+temp[2]+'" }, group: "edges" }')
+    gave_newline=False
+
+w.write("\n]")
+w.close()
\ No newline at end of file
diff --git a/nnf_and_sif_to_json_py/readme.txt b/nnf_and_sif_to_json_py/readme.txt
new file mode 100644
index 0000000..78f74b1
--- /dev/null
+++ b/nnf_and_sif_to_json_py/readme.txt
@@ -0,0 +1,2 @@
+nnf_to_json.py takes galFiltered.nnf as input as produces result.json as output.
+sif_to_json.py takes galFiltered.sif as input as produces result2.json as output.
\ No newline at end of file
diff --git a/nnf_and_sif_to_json_py/result.json b/nnf_and_sif_to_json_py/result.json
new file mode 100644
index 0000000..f62bafd
--- /dev/null
+++ b/nnf_and_sif_to_json_py/result.json
@@ -0,0 +1,695 @@
+[
+{ data: { id: "YKR026C" }, group: "nodes" },
+{ data: { id: "YGL122C" }, group: "nodes" },
+{ data: { id: "YKR026C (pp) YGL122C", source: "YKR026C", target: "YGL122C" }, group: "edges" },
+{ data: { id: "YGR218W" }, group: "nodes" },
+{ data: { id: "YGL097W" }, group: "nodes" },
+{ data: { id: "YGR218W (pp) YGL097W", source: "YGR218W", target: "YGL097W" }, group: "edges" },
+{ data: { id: "YOR204W" }, group: "nodes" },
+{ data: { id: "YGL097W (pp) YOR204W", source: "YGL097W", target: "YOR204W" }, group: "edges" },
+{ data: { id: "YLR249W" }, group: "nodes" },
+{ data: { id: "YPR080W" }, group: "nodes" },
+{ data: { id: "YLR249W (pp) YPR080W", source: "YLR249W", target: "YPR080W" }, group: "edges" },
+{ data: { id: "YBR118W" }, group: "nodes" },
+{ data: { id: "YLR249W (pp) YBR118W", source: "YLR249W", target: "YBR118W" }, group: "edges" },
+{ data: { id: "YLR293C" }, group: "nodes" },
+{ data: { id: "YLR293C (pp) YGL097W", source: "YLR293C", target: "YGL097W" }, group: "edges" },
+{ data: { id: "YMR146C" }, group: "nodes" },
+{ data: { id: "YDR429C" }, group: "nodes" },
+{ data: { id: "YMR146C (pp) YDR429C", source: "YMR146C", target: "YDR429C" }, group: "edges" },
+{ data: { id: "YFL017C" }, group: "nodes" },
+{ data: { id: "YDR429C (pp) YFL017C", source: "YDR429C", target: "YFL017C" }, group: "edges" },
+{ data: { id: "YAL003W" }, group: "nodes" },
+{ data: { id: "YPR080W (pp) YAL003W", source: "YPR080W", target: "YAL003W" }, group: "edges" },
+{ data: { id: "YBR118W (pp) YAL003W", source: "YBR118W", target: "YAL003W" }, group: "edges" },
+{ data: { id: "YOL123W" }, group: "nodes" },
+{ data: { id: "YGL044C" }, group: "nodes" },
+{ data: { id: "YOL123W (pp) YGL044C", source: "YOL123W", target: "YGL044C" }, group: "edges" },
+{ data: { id: "YPL211W" }, group: "nodes" },
+{ data: { id: "YGR014W" }, group: "nodes" },
+{ data: { id: "YPL211W (pp) YGR014W", source: "YPL211W", target: "YGR014W" }, group: "edges" },
+{ data: { id: "YJL030W" }, group: "nodes" },
+{ data: { id: "YGL229C" }, group: "nodes" },
+{ data: { id: "YJL030W (pp) YGL229C", source: "YJL030W", target: "YGL229C" }, group: "edges" },
+{ data: { id: "YJL013C" }, group: "nodes" },
+{ data: { id: "YJL013C (pp) YGL229C", source: "YJL013C", target: "YGL229C" }, group: "edges" },
+{ data: { id: "YGL122C (pp) YOL123W", source: "YGL122C", target: "YOL123W" }, group: "edges" },
+{ data: { id: "YGR014W (pp) YJL030W", source: "YGR014W", target: "YJL030W" }, group: "edges" },
+{ data: { id: "YGR014W (pp) YJL013C", source: "YGR014W", target: "YJL013C" }, group: "edges" },
+{ data: { id: "YGR203W" }, group: "nodes" },
+{ data: { id: "YIL061C" }, group: "nodes" },
+{ data: { id: "YGR203W (pp) YIL061C", source: "YGR203W", target: "YIL061C" }, group: "edges" },
+{ data: { id: "YCR084C" }, group: "nodes" },
+{ data: { id: "YBR112C" }, group: "nodes" },
+{ data: { id: "YCR084C (pp) YBR112C", source: "YCR084C", target: "YBR112C" }, group: "edges" },
+{ data: { id: "YCL067C" }, group: "nodes" },
+{ data: { id: "YCR084C (pp) YCL067C", source: "YCR084C", target: "YCL067C" }, group: "edges" },
+{ data: { id: "YER112W" }, group: "nodes" },
+{ data: { id: "YOR167C" }, group: "nodes" },
+{ data: { id: "YER112W (pp) YOR167C", source: "YER112W", target: "YOR167C" }, group: "edges" },
+{ data: { id: "YJR022W" }, group: "nodes" },
+{ data: { id: "YNR050C" }, group: "nodes" },
+{ data: { id: "YJR022W (pp) YNR050C", source: "YJR022W", target: "YNR050C" }, group: "edges" },
+{ data: { id: "YNL050C" }, group: "nodes" },
+{ data: { id: "YJR022W (pp) YNL050C", source: "YJR022W", target: "YNL050C" }, group: "edges" },
+{ data: { id: "YEL015W" }, group: "nodes" },
+{ data: { id: "YJR022W (pp) YEL015W", source: "YJR022W", target: "YEL015W" }, group: "edges" },
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diff --git a/nnf_and_sif_to_json_py/result2.json b/nnf_and_sif_to_json_py/result2.json
new file mode 100644
index 0000000..d50c4f6
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+{ data: { id: "YBR043C" }, group: "nodes" },
+{ data: { id: "YGR074W (pp) YBR043C", source: "YGR074W", target: "YBR043C" }, group: "edges" }
+]
\ No newline at end of file
diff --git a/nnf_and_sif_to_json_py/sif_to_json.py b/nnf_and_sif_to_json_py/sif_to_json.py
new file mode 100644
index 0000000..b4c0e5d
--- /dev/null
+++ b/nnf_and_sif_to_json_py/sif_to_json.py
@@ -0,0 +1,28 @@
+r=open("galFiltered.sif","r")
+w=open("result.json","w")
+nodes=[]
+w.write("[\n")
+for p in r:
+    if nodes:
+        if not gave_newline:
+            gave_newline=True
+            w.write(",\n")
+    temp=p[:-1].split(" ")
+    if temp[0] not in nodes:
+        nodes.append(temp[0])
+        w.write('{ data: { id: "'+temp[0]+'" }, group: "nodes" }')
+        gave_newline=False
+    if len(temp)>1:
+        if temp[2] not in nodes:
+            if not gave_newline:
+                w.write(",\n")
+            nodes.append(temp[2])
+            w.write('{ data: { id: "'+temp[2]+'" }, group: "nodes" },\n')
+            gave_newline=True
+    if not gave_newline:
+        w.write(",\n")
+    w.write('{ data: { id: "'+ temp[0]+" ("+temp[1]+") "+temp[2]+'", source: "'+temp[0]+'", target: "'+temp[2]+'" }, group: "edges" }')
+    gave_newline=False
+
+w.write("\n]")
+w.close()
\ No newline at end of file